Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVKLFAIHLFFIVISFGIKYYHLQGPNLIWNMTLALIALDFAYLTSLFKKKILIGLFALAWFFFYPNTFYMLTDIIHMHFVGDVLY----NKTNLILYILYVSSILFGFLSGIESFSVIMRKFRIS-----------------NIFLRWGIIGIVSFVSSFGIHIGRYARLN-----SWDILTKPQVVINELLAVPSRDSFHFIL--GFTFLQVLCLIFMDYSAGKKLEK---
2L5A Chain:A ((1-225))
----LISKIPFARLVKEVTDEFTTKDQDLRW-QSMAIMALQEASEAYLVGLLEHTNLLAL----HAKRITIMKKDMQLARRIRGQFLVPRGSMERHKLADENMRKVWSNIISKYESIEEQGDLVDLKTGEIVEDNGHIKTLTANNSTKDKRTKYTSVLRDIIDISDEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG
General information:
TITO was launched using:
RESULT:
Template:
2L5A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -193227 for 1447 contacts (-133.5/contact) +
2D Compatibility (PS) -19079 + (NN) 4985 + (LL) 1012
1D Compatibility (HY) 2800 + (ID) 1500
Total energy: -205009.0 ( -141.68 by residue)
QMean score : 0.189
(partial model without unconserved sides chains):
PDB file :
Tito_2L5A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2L5A-query.scw
PDB file :
Tito_Scwrl_2L5A.pdb
: