Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGSKATFHIGTIIKTHYLFNFFRKQGIVAMTQEEIDQMIEDWISNGFPDELKRLIPDEE
3RGC Chain:A ((54-88))
----------VLINEKMEISQMKQLGIVV-NDLELDDAINKMLAQNKTTLNAFKANLKS
General information:
TITO was launched using:
RESULT:
Template:
3RGC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4455 for 132 contacts (-33.8/contact) +
2D Compatibility (PS) -4054 + (NN) -2090 + (LL) 684
1D Compatibility (HY) -3200 + (ID) 350
Total energy: -13465.0 ( -102.01 by residue)
QMean score : 0.144
(partial model without unconserved sides chains):
PDB file :
Tito_3RGC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RGC-query.scw
PDB file :
Tito_Scwrl_3RGC.pdb
: