Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVTMTISGEMILIEYYGENFPLHPQEWKDYHSFWQEDYIRFHFQTDIGT--LTIYDGNYDLTLLWGEPVHRIEKLYHQLLTDPIPVMVYGDERFQEAYRTENGQTKNLYLEHVCNVCKEAYEVLFKQINQKERNT
3OR1 Chain:C ((15-65))
-------------------EDGFLNAFDD-------WCPEWVKYAKGSE-GIGAGS--------ADHQK-IIDFLQDYYKANGIAPMVRILSKNTGFALKEIYELFPSGPGKGACKMAGLPKPTGCV-----------
General information:
TITO was launched using:
RESULT:
Template:
3OR1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10663 for 214 contacts (-49.8/contact) +
2D Compatibility (PS) -5058 + (NN) -4087 + (LL) 3776
1D Compatibility (HY) -800 + (ID) 250
Total energy: -17082.0 ( -79.82 by residue)
QMean score : 0.098
(partial model without unconserved sides chains):
PDB file :
Tito_3OR1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OR1-query.scw
PDB file :
Tito_Scwrl_3OR1.pdb
: