Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIKLIAIDMDGTLLNDE-KKIPKENIQAIKEATQAGIKIVLCTGRPMSGILPYFNELGLTK--EEYIIMNNGCSTYSTKDWQLIDSATLTHDELIFLEEVVKEFPNVCLTLTAENTFYAVGEEVPEIVAYDADLVFTKAKSTSLDALRNQEEIVFQAMYMGLDADVTAF--QEAVEEALISKFSGVRSQDY--IYEIMPQGVTKARGLKSLIAKLGLDINQVMAIGDAPNDIELLDLVPNSVAMGNASDEIKSRCKYITVDNNKAGVAKAIYDYALR |
| 2RAV Chain:A ((1-260)) | MTKALFFDIAGTLVSFETHRIPSSTIEALEAAHAKGLKIFIATGRP-KAIINNLSELQDRNLIDGYITMNGA---YCFVGEEVIYKSAIPQEEVKAMAAFCEKKGVPCIFVEEHNISVCQPNEMVKKIFYDF-LHVNVIPTVSFEEASNKEVI-----------QMTPFITEEEEKEVLPSIPTCEIGRWYPAFADVTAKGDTKQKGIDEIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMGQAKEDVKAAADYVTAPIDEDGISKAMKHFGII |
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General information:
TITO was launched using:
| RESULT:
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Template: 2RAV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -120364 for 2267 contacts (-53.1/contact) +
2D Compatibility (PS) -27366 + (NN) -9213 + (LL) 1380
1D Compatibility (HY) -14400 + (ID) 3500
Total energy: -173463.0 ( -76.52 by residue)
QMean score : 0.523
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