Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKFAKEYPTTVLLVSLTTLVFLLMQLTYGSQAESSQVIFQFGGIQGDYLKAYPT---NLWRLISPIFVHIGWEHFLLNGLALYFVGQMGESIWGSLRFLILYILSGLM-GNIFTLFFTPHVVAAGASTSLFGVFSAIAIAGYFGKNP----YLKQVGKSYQVMILLNLFFNIFTPGVSLAGHVGGLVGGVLVAIFLTKQNGSLLFKTWQSILALMIFIIVSISLIGLSLV
3TXT Chain:A ((4-174))
--------PVTWVMMIACVVVFIAMQIL-GDQEVMLWLAWPFD----------PTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWF--GGLSGVVYALMGYVWLRGE--RDPQSGIYLQRGLIIFALIWIVAGWFDL----MANGAHIAGLAVGLAMAFVDSL--------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3TXT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134368 for 1248 contacts (-107.7/contact) +
2D Compatibility (PS) -15991 + (NN) -2902 + (LL) 5292
1D Compatibility (HY) -18400 + (ID) 1950
Total energy: -168319.0 ( -134.87 by residue)
QMean score : 0.219
(partial model without unconserved sides chains):
PDB file :
Tito_3TXT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TXT-query.scw
PDB file :
Tito_Scwrl_3TXT.pdb
: