Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKIKKLLGLTTTVVISALILGACGQSKNEDAKVVRVGTMVKSKTEKARWDKIEELVKKKGVKLKFTEFTDYTQPNKALESDEIDINAFQHYNYLNNWNKANKTNLVSVAETYFTSFRLYSGTKNGKGKYQTVSEIPNKATITIPNDAVNESRSLYLLQSAGLLKLKVSGD-TLATMSDVVSNPKSLDL-KEVDAAQTARSLDSTDAA--VINNDFVTEAGINP-KSAIFIEPKSKNAKQWYNLLVAQKGWQDKSKAKAIKEVVKAYHTDAVKKVIEKTSQGLDQPVW |
4EF1 Chain:A ((2-244)) | -----------------------------DDSVLKVGASPVPHAE--ILEHVKPLLEKEGVKLEVTTYTDYVLPNKALESGDIDANYFQHVPFFNEAVKENDYDFVNAGAIHLEPVGLYS------KKYKSLQEIPDGSTIYVSSSVSDWPRVLTILEDAGLITLKEGVDRTTATFDDIDKNTKKLKFNHESDPAIMTTLYDNEEGAAVLINSNFAVDQGLNPKKDAIALE---KESSPYANIIAVRK--EDENN-ENVKKLVKVLRSKEVQDWITKKWNGAIVPVN |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4EF1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -36338 for 1964 contacts (-18.5/contact) +
2D Compatibility (PS) -25191 + (NN) -9109 + (LL) 2400
1D Compatibility (HY) -16000 + (ID) 4300
Total energy: -88538.0 ( -45.08 by residue)
QMean score : 0.428
|
|
|