Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCAFFKTDTLKSCAIDQNAGSKK--SATLQIARRVKKGIGDFPKTEKGNSLIVGYPQIGLSPFLFSHVSGHVLRLPENKSTELWEDCQILNKGHCVEMRK
3LCM Chain:A ((8-29))
-------------------THPNPTSFNAEILKQVQTNLSKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLIFIFPIWWSGM
General information:
TITO was launched using:
RESULT:
Template:
3LCM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2393 for 69 contacts (34.7/contact) +
2D Compatibility (PS) -2418 + (NN) -3345 + (LL) 1488
1D Compatibility (HY) -800 + (ID) 150
Total energy: -2832.0 ( -41.04 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_3LCM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LCM-query.scw
PDB file :
Tito_Scwrl_3LCM.pdb
: