Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSRQNSKLIQAFIAIILFFSLGLVIKYWPDTVIAFDQNIQESVRGQLPNLSTRFFKLITVIGNTVSQIAIAIMSVTFCYLKKWYPQARFIAVNAIISGICILSLKLIFQRVRPTLTHLVFAGGYSFPSGHSMGTFMIFGSIIILLQYYMPKSIWKLLCQGILGLLIFLIGLSRIYLGVHFPTDVLAGFILAYGILNLTAYIFLAKDWLKKVK
1FJG Chain:E ((5-154))
-------DFEEKMILIRR---------------------TARMQAGGRRFR----FGALVVVGDRQGRVGLGFGKAPE----------------------VPLAVQKAGYYARRNMVEVPLQNG-TIPHE----IEVEFGASKIVLKPAAPGT--GVIAGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLRKG--
General information:
TITO was launched using:
RESULT:
Template:
1FJG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -232508 for 1174 contacts (-198.0/contact) +
2D Compatibility (PS) -16529 + (NN) -8156 + (LL) 5152
1D Compatibility (HY) 2400 + (ID) 1000
Total energy: -250641.0 ( -213.49 by residue)
QMean score : 0.286
(partial model without unconserved sides chains):
PDB file :
Tito_1FJG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FJG-query.scw
PDB file :
Tito_Scwrl_1FJG.pdb
: