Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKISEEEVRHVANLSKLRFSDQETKEFASSLSKIVDMIELLNEVDTEGVPVTTT-----MADRKTVMREDIAQPGNNRDDLFKNVPQHQDYYIKVPAILEDGGDA
1RLV Chain:A ((53-117))
----------------LSWAESRMEDFSTYYFVYEDLRDRGNKVKIQGEFLLTKKPYLPISERKTIRMEEIAEKARNFDELRLAVVDEESEITYFRVYEPDMMGE
General information:
TITO was launched using:
RESULT:
Template:
1RLV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 608 for 278 contacts (2.2/contact) +
2D Compatibility (PS) -6085 + (NN) 805 + (LL) 1564
1D Compatibility (HY) -2400 + (ID) 800
Total energy: -6308.0 ( -22.69 by residue)
QMean score : 0.322
(partial model without unconserved sides chains):
PDB file :
Tito_1RLV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RLV-query.scw
PDB file :
Tito_Scwrl_1RLV.pdb
: