Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIALFAGGDLTYFE----YDFDYFVGIDRGSLFLLKNGLSLDMAVGDFDSITEDELLYIKHYCSNIVSASAEKNDTDTELALKTIFKE-FPEAQVTVFGAFGGRIDHMMSNIFLPSDTDLEPFMSQIRLKDEQNIVTYLPSGKNQVSR-IEGMSYVSFMPE-SESTLQISGAKYELNKSNYFKKKMYSSNEFMTSPIEVELKDGYLIIIYSKDRG
3CQ9 Chain:A ((3-213))
-TIVNLLVGGPTANYPADLTTIPGPWVGADRGALRLVKRGIQPVMVVGDF---------TVKDALVGAIVVKPDQDHTDTQLAIKSIFEQLQP-DEVHLYGATGGRLDHLLANMWLVLDPVFRQWAPQIKLIDKQNSVRFFLPGDYQ-ITKEADKRYLAFVPLMP-MHLTLPDEKYQLDAAYNAYPISWASNEFSGNTGHFSFDAGVLAVIQSRD--
General information:
TITO was launched using:
RESULT:
Template:
3CQ9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105066 for 1522 contacts (-69.0/contact) +
2D Compatibility (PS) -21037 + (NN) -8730 + (LL) 1172
1D Compatibility (HY) -11200 + (ID) 3200
Total energy: -148061.0 ( -97.28 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_3CQ9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CQ9-query.scw
PDB file :
Tito_Scwrl_3CQ9.pdb
: