Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDVLIIEDDPMVEFIHRNYLEKLNYFQNIYSTASQTQAIAYLNDIKIQLVLLDIHIKEGNGLELLKLLRNQHQNTEVIVISAANEAHTVKEAFHLGIVDYLIKPFTFERFESSIEKFLNHYHTFEADKIYQDNIDHFQKIDSGWLEGEVKLDEKGLSEITYQHILDAIQELEQPFTIQELAKCSQFSHVSVRKYIAYMEEKGLLTSQQIYTKVGRPYKVYKLIKKT
4IGA Chain:A ((8-120))
--VLIVDDAAFMRMMLKDIITKAGYEVAGEATNGR-EAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKV-------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4IGA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94323 for 944 contacts (-99.9/contact) +
2D Compatibility (PS) -12152 + (NN) -6760 + (LL) 8980
1D Compatibility (HY) -8400 + (ID) 1550
Total energy: -114205.0 ( -120.98 by residue)
QMean score : 0.605
(partial model without unconserved sides chains):
PDB file :
Tito_4IGA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IGA-query.scw
PDB file :
Tito_Scwrl_4IGA.pdb
: