Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MITYQEFLSEKDSLSFEVCTQYFQDLVNSLDEVDEYSIIYWKDFITASLIYSQSRGEWLLLSREEKHAKDDTRTTKHNKFIYTLKIYIAYSKQKGYEFPWFESIKDNRKQLGDLACYIAYIYAVNAR
4YO4 Chain:A ((102-126))
-----DFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE
General information:
TITO was launched using:
RESULT:
Template:
4YO4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7377 for 99 contacts (-74.5/contact) +
2D Compatibility (PS) -2558 + (NN) -313 + (LL) 676
1D Compatibility (HY) -2000 + (ID) 450
Total energy: -12022.0 ( -121.43 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_4YO4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YO4-query.scw
PDB file :
Tito_Scwrl_4YO4.pdb
: