Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence--MIIWINGAFGSGKTQTAFELHRRLNPSYVYDPEKMGFALRSMVPQEIAKDDFQSYPLWRAFNYSLLASLTDTYRGILIVPMTIVHPEYFNEIIGRLRQEGRIVHHFTLMASKETLLKRLRTRAEGKNSWAAKQIDRCVE------GLSSPIFEDHIQTDNLSIQDVAENIAARAELPLDPDTRGSLRRFADRLMVKLNHIRIK--------------------------------------
3A4M Chain:A ((3-252))DIMLIILTGLPGVGKSTFSKNLAKILSKN----NIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALKN--YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEKIPNEVIKKMYEKFDEPGKKYKWDEPFLIIDTT-KDIDFNEIAKKLIEKSKEIPKFNISDKIDKETRKIVSEYIKSKKLDKDKIKEVVELRKEFLKKIKKVDADRVLKEFKDLLNSY


General information:
TITO was launched using:
RESULT:

Template: 3A4M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 809 -105082 -129.89 -553.06
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : -129.89
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.475

(partial model without unconserved sides chains):
PDB file : Tito_3A4M.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3A4M-query.scw
PDB file : Tito_Scwrl_3A4M.pdb: