Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MKKRIILLLAVIIAAAAAGVAFYVAKDKGHEKAADVSVNTESGDELLVSITDTDLLTKYYENDKVIHEEKLTSYPAFALDQKQQVLYYTGNNEQNEMRLFKLDLKSHKKT-MLYKGAESADSLFLSKDRSTIYFRLGKADESNFRIAAFDLKTKKYKNLYPAANDQDDTVSSFFYNQKNDSFALLHYSVEEDYKKTDEANEKGIDPEPTTIHFAEGR-QNKFNELKSLNQFISDIAVSDDDKRILFTSYTQKGTEQTASIQMLNADTKKYESIISNQKSFKLLIDAQPQFSKDG-------------KNIYFLAEAKGAKKLKDETGREAKVRTIYSYSLENKTFKKVWENPNGIINSFFVIN 1VYH Chain:C ((111-346)) -------------------------------------------------------------------------VTRVIFHPVFSVMVSASED----ATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA-----DMTIKLWDFQGFECIRTMH---GHDHNVSSVSIMPNGDHIVSASRD--K------------------TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-------DQTVRVWVVATKECKAELREHR----HVVECISWAPESSYSSISEATGSEGPFLLSGSRD----------------KTIKMWDVSTGMCLMTLVGHDNWVRGVLF--

General information: TITO was launched using: RESULT: Template: 1VYH.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1226 -112413 -91.69 -525.29 target 2D structure prediction score : 0.57 Monomeric hydrophicity matching model chain C : 0.65 3D Compatibility (PKB) : -91.69 2D Compatibility (Sec. Struct. Predict.) : 0.57 1D Compatibility (Hydrophobicity) : 0.65 QMean score : 0.527

(partial model without unconserved sides chains): PDB file : Tito_1VYH.pdb: (Unconserved sides chains are recalculated) : Sequence: align-1VYH-query.scw PDB file : Tito_Scwrl_1VYH.pdb: