Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTGTATTRRRLLAVLIALALPGAA-----VALLAEPSATGASDPCAASEVARTVGSVAKSMGDYLDSHPETNQVMTAVLQQQVGPGSVASLKAHFEANPKVASDLHALSQPLTDLSTRCSLPISGLQAIGLMQAVQGARR
4B56 Chain:B ((238-301))
---GSVPFEERILAVLEWLQLPSHERPHFYTLYLEEPDSSGHSHGPVSSEVIKALQKVDRLVGMLMD--------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4B56.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3901 for 307 contacts (-12.7/contact) +
2D Compatibility (PS) -6226 + (NN) -2898 + (LL) 5208
1D Compatibility (HY) -4400 + (ID) 1000
Total energy: -13217.0 ( -43.05 by residue)
QMean score : 0.173
(partial model without unconserved sides chains):
PDB file :
Tito_4B56.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4B56-query.scw
PDB file :
Tito_Scwrl_4B56.pdb
: