Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLGQPTRAQLAALVDHTLLKPETTRADVAALVAEAAELGVYAVCVSPSMVPVA------VQAGGVRVAAVTGFPSGKHVSSVKAHEAAAALASGASEIDMVIDIGAALCGDIDAVRSDIEAV--RAAAAGAVLKVIVESAVLLGQSNAHTLV-DACRAAEDAGADFVKTSTGCHPAGGATVRAVELMAETVGPR---LGVKASGGIRTAADAVAMLNAGATRLGLSGTRAVLDGLS
5C5Y Chain:A ((45-221))
-----------------------------------------AICIFPRFIPVAKKALKAQQTPHIKIATVTNFPQGNDDLDIALAETRAAVAYGADEVDLVFPYRALIQGN-ETIGFDMVKVCKQACSGNAKLKVIIET----GELKSEELIRKASEIAINAGADFIKTSTG-KVAINATPEAAKVMLTVIKNKNTAVGFKPAGGVRNADDAAIYLDLADNILG------------
General information:
TITO was launched using:
RESULT:
Template:
5C5Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62369 for 1344 contacts (-46.4/contact) +
2D Compatibility (PS) -18406 + (NN) -9732 + (LL) 5376
1D Compatibility (HY) -12000 + (ID) 3150
Total energy: -100281.0 ( -74.61 by residue)
QMean score : 0.346
(partial model without unconserved sides chains):
PDB file :
Tito_5C5Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5C5Y-query.scw
PDB file :
Tito_Scwrl_5C5Y.pdb
: