Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIHYRTIDSPIGPLTLAGHGSVLTNLRMLEQTYEPSRTHWTPDPGAFSGAVDQL-------NAYF--AGELTEFDVELDLRGTDFQQR------VWKALLTIPYGETRSYGEIADQIGAPGAARAVGLANGHNPIAIIVPCHRVIGASGKLTGYGGGINRKRALLELEKSRAPADLTLFD
1T38 Chain:A ((23-187))
-----TLDSPLGKLELSGCEQGLHEIKLLG--------------------PEPLMQCTAWLNAYFHQPEAIEEFPVP-ALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPSHRVVCSSGAVGNYSGGLAVKEWLLAHEGHR---------
General information:
TITO was launched using:
RESULT:
Template:
1T38.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54689 for 907 contacts (-60.3/contact) +
2D Compatibility (PS) -13740 + (NN) -6017 + (LL) 1652
1D Compatibility (HY) -11200 + (ID) 2800
Total energy: -86794.0 ( -95.69 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_1T38.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T38-query.scw
PDB file :
Tito_Scwrl_1T38.pdb
: