Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRENLGGVVVRLGVFLAVCLLTAFLLIAVFGEVRFGDGKTYYAEFANVSNLRTGKLVRIAGVEVGKVTRISINPDATVRVQFTADNSVTLTRGTRAVIRYDNLFGDRYLALEEGAGGLAVLRPGHTIPLARTQPALDLDA--LIGGFKPLFRALNPEQVNALSEQLLHAFAGQGPTIGSLLAQSAAVTNTLADRDRLIGQVITNLNVVLGSLGAHTDRLDQAVTSLSAL---IHRLAQRKTDISNAVAYTNAAAGSVADLLSQARAPLAKVVRETDRVAGIAAADHDYLDNLLNTLPDKYQALVRQGMYGDFFAFYLCDVVLKVNGKGGQPVYIKLAGQDSGRCAPK |
4GCI Chain:A ((47-191)) | ---------------------------------------------------------------------LSINPKGQVPALVLDDGSL-LTEGVAIVQYLADKVPDRHL-----------IAPSGTLSRYHAIEWLNFIATELHKGFSPLFNPNTPDEYKTIVRERLD-------------KQFSYVDSVLAEHDYLLGKKFSVADAYLFTVSRWANALNLQIKERSHLDQYMARVAER------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GCI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -42834 for 912 contacts (-47.0/contact) +
2D Compatibility (PS) -14838 + (NN) -5988 + (LL) 13684
1D Compatibility (HY) -8800 + (ID) 2000
Total energy: -60776.0 ( -66.64 by residue)
QMean score : 0.185
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