Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MMQQAVSGITGALGGAVGGVMGPLTQLPQQAMQAGQGAMQPLMSALQQTYGAEGLDVADGARLVDSIEGEPGLGGEPGAGDVGAGGGGGGTTPTGYLGPPPVPTSSPPTTPAGAPAKSVTPDPVSGTPRASGPAGMTGMPMVPPGALGAGAEGANKDKPVEKRVTGCAEWSTGQGPLNSTAECSGEICRRQAGGHQVDATDPCCAERRQG |
| 1VIP Chain:A ((25-48)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCYCGWGGKGKPQDATDRCCFVHD-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VIP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -45 for 130 contacts (-0.3/contact) +
2D Compatibility (PS) -2375 + (NN) 577 + (LL) 2868
1D Compatibility (HY) -1200 + (ID) 450
Total energy: -625.0 ( -4.81 by residue)
QMean score : 0.361
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