Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIISDGIYNLIIFVLAVYVGYHVVWNVTPALHTPLMAVTNAISAIVIVGAMLAAALTVTPLGKAMGTLAVALAAVNVFGGFLVTRRMLEMFKKKAPKAGGH
1PBU Chain:A ((333-351))
---------------------------------------------------------------------TQTFMSCNLITGMF--QRLDK------------
General information:
TITO was launched using:
RESULT:
Template:
1PBU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5779 for 67 contacts (-86.3/contact) +
2D Compatibility (PS) -1871 + (NN) -316 + (LL) 7220
1D Compatibility (HY) -2000 + (ID) 150
Total energy: -2896.0 ( -43.22 by residue)
QMean score : -0.246
(partial model without unconserved sides chains):
PDB file :
Tito_1PBU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PBU-query.scw
PDB file :
Tito_Scwrl_1PBU.pdb
: