Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ------------------------------------MKKMM---------------------QGAAALIALV------GAGESMALEWMSNSVGFRYGQQFTNPNN-PDKFAKRIYS-FTHADGYRYG---SNFFNLDVFLSDNRDPRKGTDHGGSEV-YAVYRHQLYASRVFDRPLG-TGLVKDYAFTLGFDASRN-------NNLASAKKRALVFGPTLKF-NGPGVLD----LSLLYYRE-KNHFGVPG-----------ARHPDHT-------FDTT-YMLNLTWMRPFKVGNHAAKFQGFVNYVGDKGEDYNDKHTAAETLVRTALMVAALPGDKRQPNLWLGVGYEY--WHNKFGVDGGTGSRTSTPTLNMEFTF-------------------------- |
5A07 Chain:A ((40-434)) | DHDAEVLDSIMDRLHEPLYEKDTFDPNEVLAENKQLYEEFLLQEISEPKVDNLVRSGDPLAGKAKGTILSLVRNSDLEDIISSIQQLEEEYNKNFGYPYTFLNDEEFTDEFKDGIKSILPKDRVVEFGTIGPDNWNMPDSIDRERYDQEMDKMSKENIQYAEVESYHNMCRFYSKEFYHHPLLSKYKYVWRLEPNVNFYCKINYDVFQFMNKNDKIYGFVLNLYDSPQTIETLWTSTMDFVEEHPNYLNVNGAFAWLKDNSQNPKNYDYTQGYSTCHFWTNFEIVDLDFLR-------SEPYEKYMQYLEEKGGFYYERW--GDAPVRSLALALF--ADKSSIHWFRDIGYHHTPYTNCPTCPADSDRCNGNCVPG-KFTPWSDLDNQNCQATWIRHSMSEEELEMY |
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General information:
TITO was launched using:
| RESULT:
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Template: 5A07.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -47968 for 1903 contacts (-25.2/contact) +
2D Compatibility (PS) -27928 + (NN) -11833 + (LL) 480
1D Compatibility (HY) -15600 + (ID) 2350
Total energy: -105199.0 ( -55.28 by residue)
QMean score : 0.138
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