Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSHAFARWNLLLLVASIFAGLVFAPSVDLSALPTPEARKWVLAEVPSVAVDTTVAGKLAGMSWWGRTVDEEREAESKRVSVGVDGVALIKVDWLLRGIVRDEGGIFALVAKSAEGPLRRFAAGATLP-GGERLESITEQGIRFSFSQDGNTQGFERKLYAPLP
2IVW Chain:A ((94-145))
--------------------------------------------------------------------------------------------NMRYVGILKSGQKVSGFI-EAE-GYVYTVGVGNYLGQNYGRIESITDDSIVLNE------------------
General information:
TITO was launched using:
RESULT:
Template:
2IVW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33085 for 306 contacts (-108.1/contact) +
2D Compatibility (PS) -5319 + (NN) 69 + (LL) 8368
1D Compatibility (HY) -4400 + (ID) 550
Total energy: -34917.0 ( -114.11 by residue)
QMean score : 0.482
(partial model without unconserved sides chains):
PDB file :
Tito_2IVW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IVW-query.scw
PDB file :
Tito_Scwrl_2IVW.pdb
: