Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELG-LGPALAATAIP-THELRYIDQSGATVWSEPRGV--EAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIE-ERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQ------------------RPLSHG----GITMWRGVTEFDRFLDGKTMIVANDEHWSRLVAYPISARHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRDLLTRNQLILQYPMVDRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALARNADVAAALREYEEARRPTANKIILANREREKEEWAAASRPKTEKSAALEAITGSYRNQVERPR |
| 4JY2 Chain:A ((16-339)) | --------VAGGGFAGLTAAIALKQNGW-DVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYE----------TWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARA-LG---VDISVNSEAVAADPVGRLTLQT------GEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSP---CNENELYLGLMAPAADPRGSSVPIDLEVWVEMFPF-----------------LEPCL----------IEAAKLKT-----ARYDKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEEGSSVEDALVAWETRIRPITDRC----------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JY2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158308 for 2465 contacts (-64.2/contact) +
2D Compatibility (PS) -31906 + (NN) -11542 + (LL) 6684
1D Compatibility (HY) -22400 + (ID) 5100
Total energy: -222572.0 ( -90.29 by residue)
QMean score : 0.373
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