Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKCLLLALALTCGAQALIVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEILLQKWENGECAQKKIIAEKTKIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEALEKFDKALKALPMHIRLSFNPTQLEEQCHI
4DQ3 Chain:A ((2-162))
-----------------IVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEILLQKWENGECAQKKIIAEKTKIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSA---QSLACQCLVRTPEVDDEALEKFDKALKALPMHIRLSFNPTQLEEQCHI
General information:
TITO was launched using:
RESULT:
Template:
4DQ3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115154 for 1190 contacts (-96.8/contact) +
2D Compatibility (PS) -16155 + (NN) 2458 + (LL) 2084
1D Compatibility (HY) -23600 + (ID) 7900
Total energy: -158267.0 ( -133.00 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_4DQ3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DQ3-query.scw
PDB file :
Tito_Scwrl_4DQ3.pdb
: