Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
NLYQFKNMIKCTVPSRSWWDFADYGCYCGRGGSGTPVDDLDRCCQVHDNCYNEAEKISGCWPYFKTYSYECSQGTLTCKGDNNACAASVCDCDRLAAICFAGAPYNDNNYNIDLKARCQ
3JTI Chain:A ((1-118))
NLYQFKNMIQCTVPSRSWADFADYGCYCGKGGSGTPVDDLDRCCQTHDNCYNEAENISGCRPYFKTYSYECTQGTLTCKGDNNACAASVCDCDRLAAICFAGAPYNDANYNIDLKARC-
General information:
TITO was launched using:
RESULT:
Template:
3JTI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65525 for 874 contacts (-75.0/contact) +
2D Compatibility (PS) -12969 + (NN) -8493 + (LL) 120
1D Compatibility (HY) -15200 + (ID) 5500
Total energy: -107567.0 ( -123.07 by residue)
QMean score : 0.460
(partial model without unconserved sides chains):
PDB file :
Tito_3JTI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JTI-query.scw
PDB file :
Tito_Scwrl_3JTI.pdb
: