Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCFARNKTTYNKKYQYYSNKHCRGSTPRC
1B4W Chain:A ((1-122))
--------------------HLLQFRKMIKKMTGKEPVVSYAFYGCYCGSGGRGKPKDATDRCCFVHDCCYEKVT--GCDPKWDDYTYSWKNGTIVCGGDDPCKKEVCECDKAAAICFRDNLKTYKKRYMAYPDILCSSKSEKC
General information:
TITO was launched using:
RESULT:
Template:
1B4W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42820 for 910 contacts (-47.1/contact) +
2D Compatibility (PS) -13231 + (NN) -8994 + (LL) 2592
1D Compatibility (HY) -12400 + (ID) 3100
Total energy: -77953.0 ( -85.66 by residue)
QMean score : 0.426
(partial model without unconserved sides chains):
PDB file :
Tito_1B4W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B4W-query.scw
PDB file :
Tito_Scwrl_1B4W.pdb
: