Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLLLLAASIMAFGSIQVQGNIAQFGEMIRLKTGKRAELSYAFYGCHCGLGGKGSPKDATDRCCVTHDCCYKSLEKSGCGTKLLKYKYSHQGGQITCSANQNSCQKRLCQCDKAAAECFARNKKTYSLKYQFYPNMFCKGKKPKC
1B4W Chain:A ((1-122))
---------------------HLLQFRKMIKKMTGKEPVVSYAFYGCYCGSGGRGKPKDATDRCCFVHDCCYEKV--TGCDPKWDDYTYSWKNGTIVCGGD-DPCKKEVCECDKAAAICFRDNLKTYKKRYMAYPDILCSSKSEKC
General information:
TITO was launched using:
RESULT:
Template:
1B4W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37422 for 910 contacts (-41.1/contact) +
2D Compatibility (PS) -13356 + (NN) -8733 + (LL) 2668
1D Compatibility (HY) -12400 + (ID) 3200
Total energy: -72443.0 ( -79.61 by residue)
QMean score : 0.364
(partial model without unconserved sides chains):
PDB file :
Tito_1B4W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B4W-query.scw
PDB file :
Tito_Scwrl_1B4W.pdb
: