Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIRQYRLKKISKEEKTPGCVKIKKCIIM
4M21 Chain:C ((3-168))
-TEYKLVVVGACGVGKSALTIQLIQNHF-----------YRKQVVIDGETSLLDILDTA---------DQYMRTGEGFLLVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK----------------------
General information:
TITO was launched using:
RESULT:
Template:
4M21.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109143 for 1202 contacts (-90.8/contact) +
2D Compatibility (PS) -16233 + (NN) -7276 + (LL) 3104
1D Compatibility (HY) -18800 + (ID) 6850
Total energy: -155198.0 ( -129.12 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_4M21.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M21-query.scw
PDB file :
Tito_Scwrl_4M21.pdb
: