Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSSLMVESLVQKLAHG
4G89 Chain:A ((6-237))
MKIGIIGAMEEEVTLLRDKIENRQTITIGGSEIYTGQLHGVDVALLKSGIGKVAAAMGATLLLERCQPDVIINTGSAGGLASTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADEKLVAAAESCIKALDLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFKVPFVVVRAISDVADQQSHLSFEEFLAVAARQSTLMVENLVQNLARG
General information:
TITO was launched using:
RESULT:
Template:
4G89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -184382 for 2085 contacts (-88.4/contact) +
2D Compatibility (PS) -25509 + (NN) -19048 + (LL) 0
1D Compatibility (HY) -32400 + (ID) 10450
Total energy: -271789.0 ( -130.35 by residue)
QMean score : 0.780
(partial model without unconserved sides chains):
PDB file :
Tito_4G89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G89-query.scw
PDB file :
Tito_Scwrl_4G89.pdb
: