Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPEAPPLLLAAVLLGLVLLVVLLLLLRHWGWGLCLIGWNEFILQPIHNLLMGDTKEQRILNHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFLAHVRGSSCFECTHYQSFLEYREVVDGLEKAIYKGPGSEAGP
3HVJ Chain:A ((3-215))
----------------------------------------------------DTKEQRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQGP------
General information:
TITO was launched using:
RESULT:
Template:
3HVJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155592 for 1836 contacts (-84.7/contact) +
2D Compatibility (PS) -23118 + (NN) -7533 + (LL) 4724
1D Compatibility (HY) -30000 + (ID) 8650
Total energy: -220169.0 ( -119.92 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_3HVJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HVJ-query.scw
PDB file :
Tito_Scwrl_3HVJ.pdb
: