Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDFLNSSDQNLTSEELLNRMPSKILVSLTLSGLALMTTTINSLVIAAIIVTRKLHHPANYLICSLAVTDFLVAVLVMPFSIVYIVRESWIMGQVVCDIWLSVDITCCTCSILHLSAIALDRYRAITDAVEYARKRTPKHAGIMITIVWIISVFISMPPL---FWRHQGTS-----RDDECIIKHDHIVSTIYSTFGAFYIPLALILILYYKIYRAAKTLYHKRQASRIAKEEVNGQVLLESGEKSTKSVSTSYVLEKSLSDPSTDFDKIHSTVRSLRSEFKHEKSWRRQKISGTRERKAATTLGLILGAFVICWLPFFVKELVVNVCDKCKISEEMSNFLAWLGYLNSLINPLIYTIFNEDFKKAFQKLVRCRC |
| 4BVN Chain:A ((14-299)) | -------------------------MSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASVETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREA-----KEQIR--------------------KRKTSRVML--------------------------------------MREHKALKTLGIIMGVFTLCWLPFFLVN-IVNVFNRDLVPKWLFVAFNWLGYANSAMNPIILC-RSPDFRKAFKRLLA--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4BVN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -235411 for 2066 contacts (-113.9/contact) +
2D Compatibility (PS) -27552 + (NN) 837 + (LL) 5968
1D Compatibility (HY) -33600 + (ID) 5250
Total energy: -295008.0 ( -142.79 by residue)
QMean score : 0.405
|
|
|