Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTPTDFTSPIPNMADDYGSESTSSMEDYVNFNFTDFYCEKNNVRQFASHFLPPLYWLVFIVGALGNSLVILVYWYCTRVKTMTDMFLLNLAIADLLFLVTLPFWAIA-AADQWKFQTFMCKVVNSMYKMNFYSCVLLIMCISVDRYIAIAQAMRAHTWREKRLLYSKMVCFTIWVLAAALCIPEILYSQIKEESGIAICTMVYPS-----DESTKLKSAVLTLKVILGFFLPFVVMACCYTIIIHTLI--QAKKSSKHKALKVTITVLTVFVLSQFPYNCILLVQTIDAYAMFISNCAVSTNIDICFQVTQTIAFFHSCLNPVLYVFVGERFRRDLVKTLKNLGCISQAQWVSFTRREGSLKLSSMLLETTSGALSL |
| 4RWA Chain:A ((128-400)) | -----------------------------------------------------LYSAVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADALATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTP--AKAKLINICIWVLASGVGVPIMVMAVTRPRDGAVVCMLQFPSPSWYWDTVTKI------CVFLFAFVVPILIITVCYGLMLL---GSKEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTL--VDIDRRDPLVVAALHLCI----ALGYANSSLNPVLYAFLDENFKRCFRQLC------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RWA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -261880 for 1930 contacts (-135.7/contact) +
2D Compatibility (PS) -25969 + (NN) -8457 + (LL) 6664
1D Compatibility (HY) -30000 + (ID) 3950
Total energy: -323592.0 ( -167.66 by residue)
QMean score : 0.231
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