Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSILDGLADTTFRTITTDLLYVGSNDIQYEDIKGDMASKLGYFPQKFPLTSFRGSPFQEKMTAGDNPQLVPADQVNITEFYNKSLSSFKENEENIQCGENFMDIECFMVLNPSQQLAIAVLSLTLGTFTVLENLLVLCVILHSRSLRCRPSYHFIGSLAVADLLGSVIFVYSFIDFHVFHRKDSRNVFLFKLGGV--TASFTASVGSLFLTAIDRYISIHRPLAYKRIVTRPKAVVAFCLMWTIAIVIAVLPLL--GWNCEKLQSV-------CSDIFPH----IDETYLMFWIGVTSVLLLFIVYAYMYILWKAHSHAVRMIQRGTQKSIIIHTSEDGKVQVTRPDQARMDIRLAKTLVLILVVLIICWGPLLAIMVYDVFGKMNKLIKTVFAFCSMLCLLNSTVNPIIYALRSKDLRHAFRSM--FPSCEGTAQPLDNSMGDSDCLHKHANNAASVHRAAESCIKSTVKIAKVTMSVSTDTSAEAL |
| 2VT4 Chain:A ((10-298)) | ------------------------------------------------------------------------------------------------------------------WEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNL-FITSLACADLVVGLLVV-PFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIP-----LLIMIFVALRV-YREAKEQIR------------------------EHKA------LKTLGIIMGVFTLCWLPFFLVNIVNVFNR-DLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLA------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VT4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -230921 for 1875 contacts (-123.2/contact) +
2D Compatibility (PS) -26244 + (NN) -11345 + (LL) 13132
1D Compatibility (HY) -31600 + (ID) 3950
Total energy: -290928.0 ( -155.16 by residue)
QMean score : 0.281
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