Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MMWGAGSPLAWLSAGSGNVNVSSVGPAEGPTGPAAPLPSPKAWDVVLCISGTLVSCENALVVAIIVGTPAFRAPMFLLVGSLAVADLLAGLGLVLHFAAVFCIGS-----AEMSLVLVGVLAMAFTASIGSLLAITVDRYLSLYNALTYYSETTVTRTYVMLALVWGGALGLGLLPVL----------AWNCLDGLTTCGVV----YPLSKNHLVVLAIAFFMVFGIMLQLYAQICRIVCRHAQQIALQRHLLPASHYVATRKGIATLAVVLGAFAACWLPFTVYCLLG--DAHSPPLYTYLTLLPATY-NSMINPIIYAFRNQDVQKVLWAVCCCCSSSKIPFRSRSPSDV |
| 2VT4 Chain:A ((24-291)) | ----------------------------------------------------LIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGL-LVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIA-SSIISFYIPLLIMIFVALRVYREAKEQIR---------------EH-----KALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLA----------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VT4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -238895 for 1687 contacts (-141.6/contact) +
2D Compatibility (PS) -24049 + (NN) -15754 + (LL) 4936
1D Compatibility (HY) -27200 + (ID) 3500
Total energy: -304462.0 ( -180.48 by residue)
QMean score : 0.258
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