Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNESRWTEWRILNMSSGIVNVSERHSCPLGFGHYSVVDVCIFETVVIVLLTFLIIAGNLTVIFVFHCAPLLHHYTTSYFIQTMAYADLFVGVSCLVPTLSLLHYSTGVHESLTCQVFGYIISVLKSVSMACLACISVDRYLAITKPLSYNQLVTPCRLRICIILIWIYSCLI-FLPSFFGWGK------------PGYHGDIFEWCATSWLTSAYFTGFIVCLLYAPAAFVVCFTYFHIFKICRQHTKEINDRRARFPSHEVDSSRETGHSPDRRYAMVLFRITSVFYMLWLPYIIYFLLESSRVLDN---PTLSFLT-TWLAISNSFCNCVIYSLSNSVFRLGLRRLSETMCTSCMCVKDQEAQEPKPRKRANSCSI |
| 2VT4 Chain:A ((15-296)) | -------------------------------------------SLLMALVVLLIVAGNVLVIAAIGSTQRLQTLT-NLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPG--------CCDFVTNRAYAIASSIISFYIP-LLIMIFVALRVYREAKEQIR------------------E--HKALKTLGIIM----GVFTLCWLP---FFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYCRSPD-FRKAFKRLLA---------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VT4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -263287 for 1867 contacts (-141.0/contact) +
2D Compatibility (PS) -24796 + (NN) 3102 + (LL) 7092
1D Compatibility (HY) -30400 + (ID) 3850
Total energy: -312139.0 ( -167.19 by residue)
QMean score : 0.266
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