Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MALNDCFLLNLEVDHFMHCNISSHSADLPVNDDWSHPGILYVIPAVYGVIILIGLIGNITLIKIFCTVKSMRNVPNLFISSLALGDLLLLITCAPVDASRYLADRWLFGRIGCKLIPFIQLTSVGVSVFTLTALSADRYKAIVRPMDIQASHALMKICLKAAFIWIISMLLAIPEAVFSDLHPFHEESTNQTFISCAPYPHSNE-LHPKIHSMASFLVFYVIPLSIISVYYYFIAKNLIQSAYNLPVEGNIHVKKQIESRKRLA-----KTVLVFVGLFAFCWLPNHVIYLYRSYHYSEVDTSMLHFVTSICARLLAFTNSCVNPFALYLLSKSFRKQFNTQLLCCQPGLIIRSHSTGRSTTCMTSLKSTNPSVATFSLINGNICHERYV |
| 2VT4 Chain:A ((19-297)) | -----------------------------------------------ALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIM---MHWWRDEDPQA--LKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIM----IFVALRVYREA-----KEQIR------------EHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLF-----VAFNWLGYANSAMNPI-IYCRSPDFRKAFKRLLA---------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VT4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -195434 for 1932 contacts (-101.2/contact) +
2D Compatibility (PS) -26514 + (NN) -4667 + (LL) 7784
1D Compatibility (HY) -29600 + (ID) 3500
Total energy: -251931.0 ( -130.40 by residue)
QMean score : 0.258
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