Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAAISTSIPVISQPQFTAMNEPQCFYNESIAFFYNRSGKHLATEWNTVSKLVMGLGITVCIFIMLANLLVMVAIYVNRRFHFPIYYLMANLAAADFFAGLAY--FYLMFNTGPNTRRLTVSTWLLRQGLIDTSLTASVANLLAIAIERHITV-FRMQLHTRMSNRRVVVVIVVIWTMAIVMGAIPSVGWNCICDIENCSN--------MAPLYSD----SYLVFWAIFN--LVTFVVMVVLYAHIFGYVRQRTMRMSRHSSGPRRNRDTMMSLL---KTVVIVLGAFIICWTPGLVLLLLDVCCPQCDVLAYEKFFL--LLAEFNSAMNPIIYSYRDKEMSATFRQILCCQRSENPTGPTEGSDRSASSLNHTILAGVHSNDHSVV |
| 3VGA Chain:A ((6-303)) | ------------------------------------------------SSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCA---ACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWN------NCGQSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL--------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -249240 for 1929 contacts (-129.2/contact) +
2D Compatibility (PS) -28157 + (NN) -15006 + (LL) 5036
1D Compatibility (HY) -32800 + (ID) 3950
Total energy: -324117.0 ( -168.02 by residue)
QMean score : 0.301
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