Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQAAGHPEPLDSRGSFSLPTMGANVSQDNGTGHNATFSEPLPFLYVLLPAVYSGICAVGLTGNTAVILVILRAPKMKTVTNVFILNLAVAD---GLFTLVLPVNIAEHLLQYWPFGELLCKLVLAVDHYNIFSSIYFLAVMSVDRYLVVLATVRSRHMPWRTYRGAKVASLCVWLGVTVLVLPFFSFAGVYSNELQVPS---CGLSFP-WPEQVWFKASRVYTLVLGFVLPVCTICVLYTDLLRRLRAVRLRSGA----KALGKARRKVTVLVLVVLAVCLLCWTPFHLASVVA-LTTDLPQTPLVISMSYVITSLSYANSCLNPFLYAFLDDNFRKNFRSILRC |
| 2KSA Chain:A ((6-322)) | --------PVDSDLS---PNISTNTSEPN------QFVQP-AWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVH--NEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPR----LSATATKVVICVIWVLALLLAFP----QGYYSTTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRC |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KSA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -224208 for 2344 contacts (-95.7/contact) +
2D Compatibility (PS) -30845 + (NN) -12706 + (LL) 1712
1D Compatibility (HY) -34400 + (ID) 4700
Total energy: -305147.0 ( -130.18 by residue)
QMean score : 0.289
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