Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEGEPSQPPNSSWPLSQNGTNTEATPATNLTFSSYYQHTSPVAAMFIVAYALIFLLCMVGNTLVCFIVLKNRHMHTVTNMFILNLAVSDLLVGIFCMPTTLVDNLITGWPFDNATCKMSGLVQGMSVSASVFTLVAIAVERFRCIVHPFREK--LTLRKALVTIAVIWALA-LLIMCPSAVTLTVTREEHHFMVDARNRSYPLYSCWEAWPEKGMRRVYTTVLFSHIYLAPLALIVVMYARIARKLCQAPGPAPGGEEAADPRASRRRARVVHMLVMVALFFTLSWLPLWALLLLIDYGQLSAPQLHLVTVYAFPFAHWLAFFNSSANPIIYGYFNENFRRGFQAAFRARLCPRPSGSHKEAYSERPGGLLHRRVFVVVRPSDSGLPSESGPSSGAPRPGRLPLRNGRVAHHGLPREGPGCSHLPLTIPAWDI |
4GBR Chain:A ((10-286)) | -----------------------------------------------IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLP--IQMHWYRATHQEAINC----YAEETCCDFFTNQAYAIASSIVSF----YVPLVIMVFVYSRVFQE-------AKRQLQKID-KFCLKEHKALKTLGIIMGTFTLCWLPFFIVNI------VHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCR-----SPDFRIAFQELLCL-------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GBR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -255432 for 2068 contacts (-123.5/contact) +
2D Compatibility (PS) -28577 + (NN) -12433 + (LL) 4104
1D Compatibility (HY) -26400 + (ID) 4000
Total energy: -322738.0 ( -156.06 by residue)
QMean score : 0.271
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