Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDKINQTFVREFILLGLSGYPKLEIIFFALILVMYVVILIGNGVLIIASILDS-RLHMPMYFFLGNLSFLDICYTTSSIP--STLVSLISKKRNISFSG---CAVQMFFGFAMGSTECFLLGMMAFDRYVAICNPLRYPIIMNKVVYVLLTSVSWLSGGINSTVQTSLAMRWPFCGNNIINHFLCEILAVLKL----ACSDISVNIVTLAVSNIAFLVLPLLVIFF----SYMFILYTILRTNSATGR--------HKAFSTCSAHLTVVIIFYGTIFFMYAKPKSQDLLGKDNLQATEGLVSMFYGVVTPMLNPIIYSLRNKDVKAAIKYLLS-RKAINQ |
| 2YCW Chain:A ((15-299)) | ----------------------------SLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVV-----RGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFL--PIMMHW----------WRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKRVMLMREHKALKTLGIIMGVFTLCWLPFFLV----NIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAF------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -208542 for 1925 contacts (-108.3/contact) +
2D Compatibility (PS) -26319 + (NN) -5285 + (LL) 3988
1D Compatibility (HY) -22000 + (ID) 3450
Total energy: -261608.0 ( -135.90 by residue)
QMean score : 0.308
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