Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSVLNNSEVKLFLLIGIPGLEHAHIWFSIPICLMYLLAIMGNCTILFIIKTEPSLHEPMYYFLAMLAVSDMGLSLSSLPTMLRVFLFNAMGISPNACFAQEFFIHGFTVMES-------SVLLIMSLDRFLAIHNPLRYSSILTSNRVAKMGL--ILAIRSILLVIPFPFTLRRLKYCQKNLLSHSYCLHQDTMKLACSDNKTNVIYG-------FFIALCTMLDLALIVLSYVLILKTILSIASLAERL---------KALNTCVSHICAVLTF-YVPIITLAAMHHFAKHKSPLVVILIADMFLLVPPLMNPIVYCVKTRQIWEKILGKLLNVCGR |
| 4AMJ Chain:A ((15-286)) | ---------------------------SLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVP-------FGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRAR-AKVIICTVWAISALVSFLPI------MMHWWRDEDPQALKCYQDP---GCCDFVTNRAYAIASSIISFYIPLLIMIFVALRV--YREAKEQ-----------SRVMLMREHKALKT-LGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYCRSPDFRKAFKRLLA------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4AMJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -199770 for 1611 contacts (-124.0/contact) +
2D Compatibility (PS) -24224 + (NN) -14837 + (LL) 6712
1D Compatibility (HY) -27600 + (ID) 3300
Total energy: -263019.0 ( -163.26 by residue)
QMean score : 0.240
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