Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDGDNQSENSQFLLLGISESPEQQRILFWMFLSMYLVTVLGNVLIILAISSDSHLHTPMYFFLANLSFTDLFFVTNTIPKMLVNFQSQ---NKAISYAGCLTQLYFLVSL--VTLDNLILAVMAYDRYVATCCPLHYVTAMSPGLCVLLLSLCWGLSVLYGLLLTFLLTRVTFCGPREIHYLFCDMYILLWLACSNTHIIHTALIATGCFIFLTPLGFMTTSYVRIVRT----ILQMPSASKK--------YKTFSTCASHLGVVSLFYGTLAMVYLQPLHTYSMKDSVATVMYAVL---TPMMNPFIYRLRNKDMHGAPGRVLWRPFQRPK |
| 2YCW Chain:A ((23-297)) | -----------------------------------LLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADL-----VVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISA----LVSFLPIMMHWWRDEDPQALKCYQDP----GCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIY-CRSPDFRKAFKRLLAF------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -227936 for 1847 contacts (-123.4/contact) +
2D Compatibility (PS) -25279 + (NN) -1891 + (LL) 4464
1D Compatibility (HY) -23600 + (ID) 3500
Total energy: -277742.0 ( -150.37 by residue)
QMean score : 0.233
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