Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNWVNDSIIQEFILLGFSDRPWLEFPLLVVFLISYTVTIFG-NLTIILVSRLDTKLHTPMYFFLTNLSLLDLCYTTCTVPQMLVNLCSIRKVISYRGCVAQLFIFLALGATEYLLLAVMSFDRFVAICRPLHYSVIMHQRLCLQLAAASWVTGFSNSVWLSTLTLQLPLCDPYVIDHFLCEVPALLKLSCVETTANEAELFLVSELFHLIPLTLILISYAFIV----RAVLRIQSAEGRQKAFGTCGSHLIVVSLFY------STAVSVYLQPPSPSSKDQGKM---VSLFYGIIAPMLNPLIYTLRNKEVKEGFKRLVARVFLIKK |
| 4J4Q Chain:A ((33-315)) | -------------------EPW-QFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMA------LACAAPPLVGWSRYIPEGMQCSC-GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIF--THQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4J4Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -224366 for 2037 contacts (-110.1/contact) +
2D Compatibility (PS) -27634 + (NN) -10056 + (LL) 1684
1D Compatibility (HY) -22400 + (ID) 3100
Total energy: -285872.0 ( -140.34 by residue)
QMean score : 0.230
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