Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSDNHSFLGDSPKAFILLGVSDRPWLELPLFVVLLLSYVLAMLGNVAIILASRVDPQLHSPMYIFLSHLSFLDLCYTTTTVP--QMLVNMGSSQKTISYGGCTVQ-YAVFHWLGCTECI-VLAAMALDRYVAICKPLHYAVLMHRALCQQLVALAWLSGFGNSFVQVVLTVQLPFCGRQVLNNFFCEVPAVIKL----SCADTAVND--TILAVLVAFFV--LVPLALILLSYGFIARAVLRIQSSKGR--------HKAFGTCSSHLMIVSLFYLPAIYMYLQPPSSYSQE---QGKFISLFY-SIITPTLNPFTYTLRNKDMKGALRRLLARIWRLCG |
| 2YCY Chain:A ((11-298)) | ---------------------------EAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRG----TWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPI------------MMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIR--DRASKRKRVMLMREHKALKTLGIIMGVFTLCWLP--FFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAF------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -219096 for 1843 contacts (-118.9/contact) +
2D Compatibility (PS) -26790 + (NN) -9028 + (LL) 3852
1D Compatibility (HY) -23600 + (ID) 3450
Total energy: -278112.0 ( -150.90 by residue)
QMean score : 0.287
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