Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDLKNGSLVTEFILLGFFGRWELQIFFFVTFSLIYGATVMGNILIMVTVTCRSTLHSPLYFLLGNLSFLDMCLSTATTPKMIIDLLTDHKTISVWGCVTQMFFMHFFGGAEMTLLIIMAFDRYVAICKPL-HYRTIMSHKLLKGFAILSWIIGFLHSISQIV-LTMNLP-----FCG------HNVINNIFCDLPLVIKLACIETYTLELFVIA--DSGLLSFTCFILLLVSYIVILVSVPKKSSHGLSKALSTLSAHIIVVTLFFGPCIFIYV----WPFSSLASN-----KTLAVFYTVITPLLNPSIYTLRNKKMQEAIRKLRFQYVSSAQNF |
2PED Chain:A ((58-316)) | -----------------------------------------NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIM-GVA-FTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNN--------------ESFVIYMFVVHFIIPLIVIFFCYGQLV--FTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDD |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PED.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -212722 for 1708 contacts (-124.5/contact) +
2D Compatibility (PS) -23251 + (NN) 3250 + (LL) 5552
1D Compatibility (HY) 1600 + (ID) 700
Total energy: -226271.0 ( -132.48 by residue)
QMean score : 0.239
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