Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGQHNLTVLTEFILMELTRRPELQIPLFGVFLVIYLITVVGNLTMIILTKLDSHLHTPMYFSIRHLAFVDLGNSTVICPKVLANFVVDRNTISYYACAAQL---AFFLMFIISEFFILSAMAYDRYVAICNPLLYYVIMSQRLCHVLVGIQYLYSTFQALMFTIKIFTL---------TFCGSNVISHFYCDDVPLLPMLCSNAQEIELLSILFSVFN-LISSFLIVLVSYMLILLA----ICQMHSAE-GRKKAFST------CGSHLTVVVVFYGSLLFMYMQPNSTHFFDTDKMASVFYTLVIPML--------NPLIYSLRNEEVKNAFYKLFEN |
| 3VGA Chain:A ((12-305)) | -----------------------------VELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP-----FAITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLS------FAIGLTPMLGWNNCGQSQGCGEGQVACLFEDVVPMNYM------------VYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRS |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -236480 for 1780 contacts (-132.9/contact) +
2D Compatibility (PS) -25475 + (NN) -5286 + (LL) 5036
1D Compatibility (HY) -26400 + (ID) 3500
Total energy: -292105.0 ( -164.10 by residue)
QMean score : 0.217
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