Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVSCGQVSSALSPCISYARGNGA-NPSAACCSGVRSLASSARSTADKQAACKCIKSA-A--AGLNAGKAAGIPTKCGVSVPYAISSSVDCSKIR
2RKN Chain:A ((3-75))
-DLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------DFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP------------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27448 for 469 contacts (-58.5/contact) +
2D Compatibility (PS) -7367 + (NN) -2494 + (LL) 1420
1D Compatibility (HY) -1600 + (ID) 800
Total energy: -38289.0 ( -81.64 by residue)
QMean score : 0.245
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: