Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------------VVVRVEEEEKVVCIVTDLRVCLPAVEAG---SQPSVQCCGKLKEQLSCLCGYLKIPSFTQYVSSGKAQKVLTACAIPIPKC---
3BBN Chain:T ((80-181))
AAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLKKKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIH
General information:
TITO was launched using:
RESULT:
Template:
3BBN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30155 for 446 contacts (-67.6/contact) +
2D Compatibility (PS) -8074 + (NN) -611 + (LL) 0
1D Compatibility (HY) 3200 + (ID) 400
Total energy: -36040.0 ( -80.81 by residue)
QMean score : 0.416
(partial model without unconserved sides chains):
PDB file :
Tito_3BBN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BBN-query.scw
PDB file :
Tito_Scwrl_3BBN.pdb
: