Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQCRDELSNVQVCAPLLL------PGAVNP-------AANSNCCAALQATNKDCLCNALRAA----------------------TTLTSLCNLPS-FDCGISA
1SM7 Chain:A ((13-107))
-------QHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTCPFI-
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45476 for 363 contacts (-125.3/contact) +
2D Compatibility (PS) -6261 + (NN) -2554 + (LL) 744
1D Compatibility (HY) -5200 + (ID) 700
Total energy: -59447.0 ( -163.77 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: