Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VCDMDNDDFMACQPAAAATTDPQPAPSEACCATLGKADL----------RCLCSYKNSPWLSLYNIDPKRAMELPAKCGLTTPPDC
1BWO Chain:A ((3-79))
-CGHVDSLVRPCLSYVQGG----PGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARG--IHNLNEDNARSIPPKCGVNLPY--
General information:
TITO was launched using:
RESULT:
Template:
1BWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11078 for 430 contacts (-25.8/contact) +
2D Compatibility (PS) -6829 + (NN) -3809 + (LL) 276
1D Compatibility (HY) -2000 + (ID) 800
Total energy: -24240.0 ( -56.37 by residue)
QMean score : 0.348
(partial model without unconserved sides chains):
PDB file :
Tito_1BWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BWO-query.scw
PDB file :
Tito_Scwrl_1BWO.pdb
: